ArachnoServer: a database of protein toxins from spiders
Identifieur interne : 007C54 ( Main/Exploration ); précédent : 007C53; suivant : 007C55ArachnoServer: a database of protein toxins from spiders
Auteurs : David La Wood [Australie] ; Tomas Miljenovi [Australie] ; Shuzhi Cai [Australie] ; Robert J. Raven [Australie] ; Quentin Kaas [Australie] ; Pierre Escoubas [France] ; Volker Herzig [Australie] ; David Wilson [Australie] ; Glenn F. King [Australie]Source :
- BMC Genomics [ 1471-2164 ] ; 2009.
Abstract
Venomous animals incapacitate their prey using complex venoms that can contain hundreds of unique protein toxins. The realisation that many of these toxins may have pharmaceutical and insecticidal potential due to their remarkable potency and selectivity against target receptors has led to an explosion in the number of new toxins being discovered and characterised. From an evolutionary perspective, spiders are the most successful venomous animals and they maintain by far the largest pool of toxic peptides. However, at present, there are no databases dedicated to spider toxins and hence it is difficult to realise their full potential as drugs, insecticides, and pharmacological probes.
We have developed ArachnoServer, a manually curated database that provides detailed information about proteinaceous toxins from spiders. Key features of ArachnoServer include a new molecular target ontology designed especially for venom toxins, the most up-to-date taxonomic information available, and a powerful advanced search interface. Toxin information can be browsed through dynamic trees, and each toxin has a dedicated page summarising all available information about its sequence, structure, and biological activity. ArachnoServer currently manages 567 protein sequences, 334 nucleic acid sequences, and 51 protein structures.
ArachnoServer provides a single source of high-quality information about proteinaceous spider toxins that will be an invaluable resource for pharmacologists, neuroscientists, toxinologists, medicinal chemists, ion channel scientists, clinicians, and structural biologists. ArachnoServer is available online at
Url:
DOI: 10.1186/1471-2164-10-375
PubMed: 19674480
PubMed Central: 2907703
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 002282
- to stream Pmc, to step Curation: 002132
- to stream Pmc, to step Checkpoint: 002863
- to stream Ncbi, to step Merge: 000629
- to stream Ncbi, to step Curation: 000629
- to stream Ncbi, to step Checkpoint: 000629
- to stream Main, to step Merge: 008339
- to stream Main, to step Curation: 007C54
Le document en format XML
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Raven</name><affiliation wicri:level="1"><nlm:aff id="I4">Queensland Museum, Brisbane QLD 4101, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Queensland Museum, Brisbane QLD 4101</wicri:regionArea><wicri:noRegion>Brisbane QLD 4101</wicri:noRegion></affiliation></author><author><name sortKey="Kaas, Quentin" sort="Kaas, Quentin" uniqKey="Kaas Q" first="Quentin" last="Kaas">Quentin Kaas</name><affiliation wicri:level="1"><nlm:aff id="I3">Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072</wicri:regionArea><wicri:noRegion>QLD 4072</wicri:noRegion></affiliation></author><author><name sortKey="Escoubas, Pierre" sort="Escoubas, Pierre" uniqKey="Escoubas P" first="Pierre" last="Escoubas">Pierre Escoubas</name><affiliation wicri:level="1"><nlm:aff id="I5">Institut de Pharmacologie Moléculaire et Cellulaire, CNRS, 06560 Valbonne, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut de Pharmacologie Moléculaire et Cellulaire, CNRS, 06560 Valbonne</wicri:regionArea><wicri:noRegion>06560 Valbonne</wicri:noRegion><wicri:noRegion>06560 Valbonne</wicri:noRegion></affiliation></author><author><name sortKey="Herzig, Volker" sort="Herzig, Volker" uniqKey="Herzig V" first="Volker" last="Herzig">Volker Herzig</name><affiliation wicri:level="1"><nlm:aff id="I3">Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072</wicri:regionArea><wicri:noRegion>QLD 4072</wicri:noRegion></affiliation></author><author><name sortKey="Wilson, David" sort="Wilson, David" uniqKey="Wilson D" first="David" last="Wilson">David Wilson</name><affiliation wicri:level="1"><nlm:aff id="I3">Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072</wicri:regionArea><wicri:noRegion>QLD 4072</wicri:noRegion></affiliation></author><author><name sortKey="King, Glenn F" sort="King, Glenn F" uniqKey="King G" first="Glenn F" last="King">Glenn F. King</name><affiliation wicri:level="1"><nlm:aff id="I3">Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072</wicri:regionArea><wicri:noRegion>QLD 4072</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Venomous animals incapacitate their prey using complex venoms that can contain hundreds of unique protein toxins. The realisation that many of these toxins may have pharmaceutical and insecticidal potential due to their remarkable potency and selectivity against target receptors has led to an explosion in the number of new toxins being discovered and characterised. From an evolutionary perspective, spiders are the most successful venomous animals and they maintain by far the largest pool of toxic peptides. However, at present, there are no databases dedicated to spider toxins and hence it is difficult to realise their full potential as drugs, insecticides, and pharmacological probes.</p></sec><sec><title>Description</title><p>We have developed ArachnoServer, a manually curated database that provides detailed information about proteinaceous toxins from spiders. Key features of ArachnoServer include a new molecular target ontology designed especially for venom toxins, the most up-to-date taxonomic information available, and a powerful advanced search interface. Toxin information can be browsed through dynamic trees, and each toxin has a dedicated page summarising all available information about its sequence, structure, and biological activity. ArachnoServer currently manages 567 protein sequences, 334 nucleic acid sequences, and 51 protein structures.</p></sec><sec><title>Conclusion</title><p>ArachnoServer provides a single source of high-quality information about proteinaceous spider toxins that will be an invaluable resource for pharmacologists, neuroscientists, toxinologists, medicinal chemists, ion channel scientists, clinicians, and structural biologists. ArachnoServer is available online at <ext-link ext-link-type="uri" xlink:href="http://www.arachnoserver.org">http://www.arachnoserver.org</ext-link>.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="King, Gf" uniqKey="King G">GF King</name></author><author><name sortKey="Gentz, Mc" uniqKey="Gentz M">MC Gentz</name></author><author><name sortKey="Escoubas, P" uniqKey="Escoubas P">P Escoubas</name></author><author><name sortKey="Nicholson, Gm" uniqKey="Nicholson G">GM Nicholson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kaas, Q" uniqKey="Kaas Q">Q Kaas</name></author><author><name sortKey="Westermann, Jc" uniqKey="Westermann J">JC Westermann</name></author><author><name sortKey="Halai, R" uniqKey="Halai R">R Halai</name></author><author><name sortKey="Wang, Ck" uniqKey="Wang C">CK Wang</name></author><author><name sortKey="Craik, Dj" uniqKey="Craik D">DJ 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sortKey="King, Gf" uniqKey="King G">GF King</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Alexander, Sph" uniqKey="Alexander S">SPH Alexander</name></author><author><name sortKey="Mathie, A" uniqKey="Mathie A">A Mathie</name></author><author><name sortKey="Peters, Ja" uniqKey="Peters J">JA Peters</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, Sf" uniqKey="Altschul S">SF Altschul</name></author><author><name sortKey="Madden, Tl" uniqKey="Madden T">TL Madden</name></author><author><name sortKey="Schaffer, Aa" uniqKey="Schaffer A">AA Schaffer</name></author><author><name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name></author><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z Zhang</name></author><author><name sortKey="Miller, W" uniqKey="Miller W">W Miller</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>France</li></country></list><tree><country name="Australie"><noRegion><name sortKey="Wood, David La" sort="Wood, David La" uniqKey="Wood D" first="David La" last="Wood">David La Wood</name></noRegion><name sortKey="Cai, Shuzhi" sort="Cai, Shuzhi" uniqKey="Cai S" first="Shuzhi" last="Cai">Shuzhi Cai</name><name sortKey="Cai, Shuzhi" sort="Cai, Shuzhi" uniqKey="Cai S" first="Shuzhi" last="Cai">Shuzhi Cai</name><name sortKey="Herzig, Volker" sort="Herzig, Volker" uniqKey="Herzig V" first="Volker" last="Herzig">Volker Herzig</name><name sortKey="Kaas, Quentin" sort="Kaas, Quentin" uniqKey="Kaas Q" first="Quentin" last="Kaas">Quentin Kaas</name><name sortKey="King, Glenn F" sort="King, Glenn F" uniqKey="King G" first="Glenn F" last="King">Glenn F. King</name><name sortKey="Miljenovi, Tomas" sort="Miljenovi, Tomas" uniqKey="Miljenovi T" first="Tomas" last="Miljenovi">Tomas Miljenovi</name><name sortKey="Raven, Robert J" sort="Raven, Robert J" uniqKey="Raven R" first="Robert J" last="Raven">Robert J. Raven</name><name sortKey="Wilson, David" sort="Wilson, David" uniqKey="Wilson D" first="David" last="Wilson">David Wilson</name><name sortKey="Wood, David La" sort="Wood, David La" uniqKey="Wood D" first="David La" last="Wood">David La Wood</name></country><country name="France"><noRegion><name sortKey="Escoubas, Pierre" sort="Escoubas, Pierre" uniqKey="Escoubas P" first="Pierre" last="Escoubas">Pierre Escoubas</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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